The regions around each SNP can be binned in a user-defined fashion to allow for analysis of very broad patterns as well as a detailed investigation of specific binding shapes. Furthermore, SNPhood supports the integration with genotype information to investigate and visualize genotype-specific binding patterns.
Finally, SNPhood can be employed for determining, investigating, and visualizing allele-specific binding patterns around the SNPs of interest. For older versions of R, please refer to the appropriate Bioconductor release. To view documentation for the version of this package installed in your system, start R and enter:. Follow Installation instructions to use this package in your R session. Community resources and tutorials.
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